Primary Links
NCBI Entrez
NCBI Map Viewer
TIGR
Pfam
GeneScan
FGENESH
EMBL
KEGG
Cholera
Genome (Vibrio cholerae)
SGD (Saccharomyces cervisceae)
Wormbase
(Caenorhabditis
elegans)
FlyBase (Drosophila melanogaster)
TAIR (Arabidopsis thaliana)
MGI (Mus musculus)
Plasmid Genome Database
Other Links and
Tools
GNN - Genome News
Network
GeneMark
for Prokaryotes
ClustalW at EMBL
BoxShade
Cn3D
tutorial at NCBI
Glimmer3
PDB
Molecules2Go
ExPASy
tRNAscan-SE
TRANSFAC
TopPred
PSORT
TargetP
|
Exercises
E1. Exploring
sequence databases (Ex1.html)
E2. Repetitive
DNA (Ex2.html)
E3. Finding
genes (Ex3.html)
E4. E-vaues (Ex4.doc)
E5. BLAST
(Ex5.html)
E6. Multiple
Alignments (Ex6.html)
E7. Introduction
to Artemis (Ex7.html)
E8. Introduction
to Sequencher (Ex8.html)
Lab
Files
Photos
from the field trip
PPT
Files from Lecture
P1. Molecular
Biology review.ppt
P2. Blue/white
screening and sequencing
P3. Gene
finding/Srr-2
P3. Matrix
and Gene families
P4. Pathways
Final exam
|
PDF Files
Horizontal
gene flow.pdf
History
of Genomics.pdf
GenBank.pdf
Human genome paper
Gene
structure prediction.pdf
Dynamic
programming.pdf
BLAST.pdf
Glycolytic
enzymes.pdf
Ascorbate
peroxidase.pdf
Placental.pdf
Elephants.pdf
Pfam.pdf
Poliovirus.pdf
Branched-chain
amino acid.pdf
Sargasso
Sea.pdf
|
